lavaburst
  • Introduction
    • A probabilistic segmentation model for genomic interaction maps
  • Motivation
    • What’s in a domain?
    • Finding communities in a haystack
    • Restrict the search space
  • Theory
    • The segmentation path graph
    • A statistical ensemble
  • Algorithms
    • Optimal segmentation
    • Marginal probabilities
    • Sampling
  • Scoring systems
    • Extensivity
    • Log-odds scores
    • Potts energy model
    • Other scoring functions
  • Examples
  • Related Methodologies
    • Network community detection
    • Sequence alignment
    • Hidden Markov Models
  • Extensions
    • Gapped and local segmentation
    • Emission probabilities and inference
  • References
 
lavaburst
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  • Related Methodologies
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Related Methodologies¶

Network community detection¶

Sequence alignment¶

Karlin-Altschul statistics.

Probabilistic alignment theory.

Well-definedness.

Hidden Markov Models¶

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© Copyright 2014, Nezar Abdennur.

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